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How to Handle a Publicly Traded Partnership (PTP) for Tax Purposes

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Understanding What a Publicly Traded Partnership Is and Why It Matters for Taxes

A publicly traded partnership (PTP), often referred to as a master limited partnership (MLP), is a partnership that trades on national exchanges yet generally retains pass-through tax treatment. Unlike a corporation that issues a Form 1099-DIV and pays entity-level tax (unless it is a regulated investment company or REIT), a PTP typically issues a Schedule K-1 (Form 1065) to each unitholder. The K-1 reports the investor’s share of ordinary business income or loss, interest, dividends, capital gains, deductions, credits, and other items. This pass-through framework means that income may be taxable even if the partnership makes no cash distributions in a given year, which can surprise investors accustomed to corporate stock taxation.

Investors often misunderstand how pervasive the tax integration is. A PTP interest is not just “a stock that pays a distribution.” It is a partnership interest with all of the attendant complexities: basis adjustments tied to income, losses, and distributions; state-by-state filing footprints; passive activity limitations; and specialized sale reporting. Furthermore, not every exchange-traded partnership is taxed as a partnership. If the entity fails the qualifying income rules or elects corporate status, it may be taxed as a corporation and issue a Form 1099 instead of a K-1. Identifying what you actually own is foundational. Assumptions lead to erroneous filings, IRS notices, and unnecessary penalties.

The Schedule K-1 Is Central: What It Tells You and What It Does Not

The Schedule K-1 reports your share of partnership items by category. Line 1 often reflects ordinary business income or loss. Other boxes address rental real estate, interest income, qualified dividends, capital gains, Section 1231 items, Section 179 deductions, credits, and partner-level information such as tax basis capital and ending capital account. Critically, the K-1 includes footnotes and statements that provide Section 199A details, Section 163(j) excess business interest, state source income, and sometimes a sales schedule if there was a disposition of units during the year. For PTPs, do not expect a broker 1099 package to be sufficient. The 1099 rarely captures the ordinary income recapture on sale or the correct basis; the K-1 and its statements carry that load.

Nonetheless, the K-1 is not a complete solution in itself. It typically does not track your outside basis year-to-year across multiple holdings, and it does not aggregate with other PTPs for loss limitation purposes. PTPs often provide starting and ending tax capital, which is not the same as outside basis. Outside basis incorporates your share of partnership liabilities under Section 752 and prior-year cumulative activity. Relying on “capital account equals basis” is a common and costly error. You must maintain a robust basis schedule that reflects contributions, distributions, allocated income and loss, and debt allocations. Without it, you cannot correctly determine loss deductibility, report gain or loss on sale, or understand the risk of ordinary income recapture.

Basis, At-Risk Amounts, and Debt Allocations: The Backbone of PTP Taxation

Your tax basis in PTP units begins with what you paid (including acquisition costs) and is adjusted annually. Basis increases with income allocations and your share of liabilities and decreases with losses, deductions (including depreciation), and distributions. Many PTPs are capital-intensive and allocate significant depreciation, which can shelter current cash distributions from immediate tax but simultaneously erode basis. This is not “free money.” Basis reduction sets the stage for taxable consequences later, especially on sale, where depreciation and certain ordinary items may be recaptured under Section 751.

At-risk rules impose an additional limitation separate from basis. At-risk amounts typically include cash invested and certain types of debt for which you are personally at risk. Much PTP debt is nonrecourse or otherwise does not increase at-risk amounts, which means your loss deductible in the current year can be narrower than your basis suggests. Complexities intensify with debt allocations under Section 752. Shifts in partnership liabilities can increase or decrease your basis and potentially trigger deemed distributions or contributions. Investors who ignore debt allocation changes risk inadvertent recognition of gain when liabilities decrease or distributions exceed basis. Careful year-over-year tracking is indispensable.

Passive Activity Limitations and the Special PTP Rule

Losses from a PTP are generally passive under Section 469, regardless of your level of participation. However, PTPs are subject to a special silo rule: Passive losses from one PTP may only offset passive income from the same PTP. They cannot be netted with passive income from non-PTP activities or from other PTPs. This is a frequent surprise for investors who assume all passive losses mingle freely. A taxpayer may accumulate suspended passive losses in multiple silos, each tied to a distinct PTP, waiting for income from that same PTP or a fully taxable disposition of that PTP interest.

When you sell all units of a PTP in a fully taxable transaction, you generally free up suspended passive losses tied to that PTP. But timing and ordering matter. The sale itself can produce ordinary income recapture and capital gain or loss, and the released passive losses may offset other income subject to passive activity gain availability rules. Furthermore, if you only sell a portion of your units, suspended losses commonly remain trapped. Given these constraints, tax modeling before disposition is prudent. It is unwise to assume that “a big passive loss will wipe out other income this year.” In most PTP contexts, it will not.

Distributions Are Usually Not Dividends: How Cash Flows Affect Basis

Cash distributions from a PTP are typically a return of capital for federal income tax purposes, not dividends. They generally reduce your outside basis dollar-for-dollar to the extent of your basis. Once your basis reaches zero, further cash distributions become taxable capital gains. What investors call “yield” is commonly a blend of operating cash and depreciation-driven tax deferral. The tax deferral is not permanent. It often reappears as ordinary income or capital gain upon disposition through depreciation recapture mechanics and basis reconciliation.

A pervasive misconception is that if distributions are not currently taxed, there is nothing to worry about. In reality, each untaxed dollar is recorded in the basis ledger and shapes future reporting. Another misconception is that the broker’s “cost basis” field includes all these adjustments. It rarely does. Brokers may track purchase price and some reinvestments, but they seldom incorporate annual basis effects from K-1 activity. Investors must either maintain their own basis worksheet or retain a professional who does. Failure to do so can result in double taxation or understated gains that trigger IRS notices and interest.

Selling PTP Units: Coordinating the 1099-B, K-1 Sales Schedule, and Section 751

When you sell PTP units, the broker issues a Form 1099-B that reports gross proceeds and, sometimes, a cost basis that is not adjusted for years of K-1 activity. Meanwhile, the PTP typically provides a Sales Schedule with your ordinary income recapture under Section 751 and the partnership’s view of your adjusted basis. Correct reporting generally requires the following steps: report the sale on Schedule D/Form 8949 using the correct adjusted basis; separately report the Section 751 ordinary income, often on Form 4797 as ordinary income, consistent with the PTP’s instructions; and ensure that the ordinary income amount increases your basis for capital gain calculation to avoid double taxation.

This integration is routinely mishandled by do-it-yourself filers and software that default to broker-reported basis. If you simply accept the 1099-B basis and skip the K-1 sales schedule, you risk either overstating capital gains (double-counting depreciation) or omitting ordinary income (triggering underreporting penalties). Additionally, selling at a loss does not guarantee a deductible capital loss after considering ordinary income recapture and suspended passive losses. In some cases, taxpayers experience a counterintuitive result: reportable ordinary income combined with a capital loss that is either limited or muted. This is normal in the PTP context and emphasizes why pre-sale projections are critical.

Section 199A and PTP Income: The 20 Percent Deduction Opportunity and Pitfalls

Many PTPs pass through income that may be eligible for the Section 199A qualified business income (QBI) deduction, often labeled on the K-1 as “qualified publicly traded partnership income.” The K-1 statements typically provide the amounts as well as the associated W-2 wage and UBIA-by-PTP data when relevant. Eligibility and the deduction amount are tied to your taxable income and the character of the PTP’s income. Not all PTP-generated items qualify, and losses or negative qualified items can reduce or eliminate the deduction. Proper capture of the K-1’s 199A data is essential; overlooking the statement commonly leads to leaving money on the table.

However, the presence of 199A data does not mean an automatic 20 percent benefit. Thresholds, phase-outs, and the interaction with capital gains can sharply modify the deduction. Additionally, suspended passive losses from the PTP can offset QBI in later years, affecting the deduction in unexpected ways. Given the number of interacting variables—taxable income levels, filing status, capital gains, and PTP-specific allocations—professionals often run multiple scenarios to avoid inadvertent phase-outs or to time dispositions and income recognition for optimal outcomes.

Excess Business Interest Under Section 163(j): Carryforwards You May Not See

Some PTPs allocate excess business interest expense (EBIE) to partners under Section 163(j). EBIE is not currently deductible at the partner level and is carried forward, often only usable against future income from the same PTP. This “tagging” resembles the special PTP passive loss silo and is easy to overlook. The K-1 statements typically disclose EBIE and track carryforward amounts. Failing to record these carryforwards can result in missed deductions when income returns or upon disposition.

Complications proliferate when you have multiple PTPs, each with its own EBIE pool. Tax software may not seamlessly track the items, and transferring data between years can be error-prone. If a PTP restructures or merges, mapping of EBIE and related attributes demands careful attention to the issuer’s guidance. A professional who understands Section 163(j) in the partnership context can reconcile the carryforwards and ensure they are released or utilized correctly, especially at sale.

State Tax Exposure: Filing Requirements, Withholding, and Composite Returns

Many PTPs operate in multiple states and pass through state-source income, gain, and deductions. Your K-1 or its state footnotes will list the states where the partnership conducted business and the apportionment or allocation of your share. Some states impose filing requirements on nonresidents at thresholds that can be surprisingly low. Others assess partner-level withholding or offer composite returns or elective pass-through entity taxes that complicate the analysis. Receiving a small amount of state-source income from a PTP can trigger forms, withholding reconciliations, or estimated tax obligations in several jurisdictions.

Investors often believe that the absence of a state K-1 means there is no state filing duty. That is incorrect. In many cases, the information is embedded in a footnote, not a separate schedule, and the onus is on the taxpayer to identify it. Moreover, certain states require nonresident withholding by the partnership, which may show up as a credit on your state return. Missing these credits forfeits cash; ignoring filing obligations risks penalties. An experienced practitioner can triage where filings are necessary, pursue refunds of over-withheld amounts, and manage composite participation decisions aligned with your overall tax posture.

Retirement Accounts and UBTI: When “Tax-Deferred” Is Not Tax-Free

Holding a PTP in an IRA or other tax-exempt account introduces unrelated business taxable income (UBTI) risk. If the aggregate UBTI from all such investments in the account exceeds $1,000 in a tax year, the custodian must file Form 990-T and the account may owe tax. Certain PTPs regularly generate UBTI, while others do so sporadically due to sales of assets, debt-financed income, or restructuring. Additionally, sale of PTP units within an IRA can create UBTI through ordinary income recapture. Many investors mistakenly assume that retirement accounts shield all partnership activity from current tax. That is inaccurate where UBTI thresholds are met.

Custodians vary in their willingness and timing to file 990-T. The burden of identifying UBTI still largely rests with the investor and advisor. Failure to address UBTI can result in tax, penalties, and interest paid out of retirement funds, undermining returns. Given these stakes, selecting PTPs for retirement accounts requires careful screening and often favors structures less prone to UBTI. If you already hold PTPs in tax-exempt accounts, engage a professional early each year to monitor K-1s, aggregate UBTI, and coordinate with the custodian’s 990-T process.

Foreign and Withholding Considerations, Including Section 1446(f) on Sales

PTPs commonly have income that is effectively connected with a U.S. trade or business at the partnership level, which can trigger Section 1446 withholding on non-U.S. investors. In addition, recent rules under Section 1446(f) require brokers to withhold on the sale of a PTP interest by certain non-U.S. persons, reflecting the embedded ECI in the partnership. While U.S. persons are not subject to 1446(f) sale withholding, the presence of these regimes underscores the government’s emphasis on collection mechanisms for partnership-level ECI.

Even domestic investors feel the downstream effects. Broker systems and custodians have implemented operational changes for PTP sales, and occasional misclassifications create headaches for taxpayers who must reclaim improper withholdings or rectify mismatched reports. When cross-border issues enter the picture—dual-status years, treaty claims, or mixed ownership—complexity multiplies. Professional coordination among tax counsel, brokers, and partnership investor relations is often necessary to secure correct withholding and documentation.

When a PTP Is Not a PTP for Tax Purposes: Corporate Electors and Qualifying Income Failures

Some exchange-traded partnerships elect to be taxed as corporations or fail the qualifying income tests that enable partnership treatment. These entities issue Forms 1099 to investors and pay entity-level tax. The investor experience more closely resembles that of owning common stock, with dividends potentially qualified and basis unaffected by partnership allocations. However, midstream reorganizations, roll-ups, and conversions can occur, creating transition years where investors receive a final K-1, recognize gain on a deemed sale, and then hold a corporate security thereafter.

Misidentifying the tax status leads to filing the wrong forms or missing critical transitional transactions. In conversion years, investors often have a taxable exchange that triggers ordinary income recapture and capital gain, followed by a new basis in the corporate shares. The details are issuer-specific and reside in offering documents and investor tax packages. Before assuming that a K-1 will arrive—or that it will not—confirm the entity’s current tax classification and whether a recent transaction changed it. Proper handling avoids duplicate taxation and missed reporting items.

Estate, Gift, and Death: Step-Up, Suspended Losses, and Planning

On death, a decedent’s PTP units generally receive a step-up in basis to fair market value. This can eliminate built-in capital gain, but not all attributes reset favorably. Suspended passive activity losses attributable to the decedent’s interest are only deductible on the final return to the extent they exceed the basis step-up; the portion equal to the step-up is lost. Additionally, depreciation recapture potential embedded in Section 751 property is typically addressed through the basis step-up, but the specifics can be intricate depending on timing, community property status, and titling.

For high-net-worth individuals holding significant PTP positions, these rules present planning opportunities and traps. Gifting units before death transfers the carryover basis and suspended losses to the recipient, which may be beneficial or burdensome depending on basis and loss profiles. Trust ownership introduces fiduciary accounting and DNI considerations. Coordinating income tax, estate tax, and state tax outcomes requires a bespoke plan, not generic rules of thumb. Do not rely on folklore about “death wipes out all taxes.” It does not automatically free suspended passive losses, and it can forfeit valuable attributes if executed without tailored advice.

Recordkeeping, Software Limitations, and the Case for Professional Help

PTP investors must maintain detailed records of purchases, sales (including lots), distributions, K-1 allocations, debt share changes, and adjustments for each year. A well-structured basis schedule should reconcile to K-1 activity and capture all adjustments through the date of sale. Off-the-shelf tax software is inconsistent in its ability to handle PTP silos, EBIE carryforwards, Section 751 ordinary income, and multi-state reporting. Even when software has the fields, correct input often depends on manually translating K-1 statements that vary by issuer.

Compounding the challenge, PTPs frequently issue corrected K-1s late in the filing season. Filing early can necessitate amended returns. Furthermore, many broker 1099 packages do not fully reconcile with K-1 data, creating apparent discrepancies that the IRS matching system flags. Engaging a professional who handles PTPs routinely can prevent misreporting, minimize amendments, and design proactive strategies—such as timing dispositions to release suspended losses in high-rate years, calibrating estimated taxes, and aligning state filings with composite and credit opportunities.

Practical Steps for New and Experienced PTP Investors

Before buying, verify the entity’s tax status, likely UBTI profile if held in a retirement account, and historical K-1 timing. Decide whether you can accommodate multi-state filings and passive loss silos. If you proceed, set up a robust basis tracking system on day one. Record purchase dates, quantities, and costs by lot. Each year, post K-1 allocations to your basis schedule, update for distributions, and record any changes in your share of liabilities. Maintain a separate log of suspended passive losses, EBIE carryforwards, and 199A amounts. If you own multiple PTPs, keep each silo separate to avoid cross-contamination of attributes.

Before selling, obtain the PTP’s sales schedule, model the expected ordinary income recapture and capital outcomes, and forecast the release of suspended losses. Coordinate with your advisor on estimated tax payments to avoid underpayment penalties, especially in years with large ordinary income recapture. After sale, ensure the ordinary income component is reported on the correct form (often Form 4797), adjust basis appropriately for the capital gain computation, and reconcile state reporting. Precision at this stage prevents double taxation and mitigates audit risk.

Common Misconceptions That Create Tax Trouble

Several myths persist. First, “PTP distributions are dividends.” They usually are not; they are returns of capital that reduce basis. Second, “I can net all passive losses across all activities.” Not with PTPs; the special silo rule restricts cross-netting. Third, “My broker’s basis is correct.” It is often incomplete, as it typically ignores annual K-1 adjustments and Section 751 nuances. Fourth, “There is no tax in an IRA.” UBTI can trigger current tax and filings. Fifth, “I can sell at a loss and deduct it all.” Section 751 ordinary income and suspended loss mechanics regularly reduce or reverse the apparent benefit.

Additional pitfalls include ignoring state-source income, overlooking EBIE carryforwards, failing to capture 199A data, and misreporting sales due to missing the PTP’s supplementary instructions. Each error can be expensive to fix retroactively, and some benefits are permanently lost if not claimed timely. Recognizing these patterns is the first step; building a compliant process with professional oversight is the solution.

Conclusion: Complexity Is the Rule, Not the Exception

PTPs offer attractive economics and tax deferral features, but they demand disciplined tax compliance. The interplay of basis, passive loss silos, ordinary income recapture, state filings, 199A, and EBIE is not intuitive. Even “simple” facts—one purchase, a few years of distributions, a single sale—often generate multi-form reporting with competing categories of income and loss. The partnership’s K-1 and statements are essential tools, yet they require translation into your unique tax posture. For most investors, professional guidance is not a luxury; it is a safeguard against double taxation, penalties, and missed opportunities.

If you hold or are considering PTP investments, approach them with a plan. Confirm the tax status, set up basis tracking, monitor passive and interest limitation attributes, manage state exposure, and model sales in advance. With a deliberate process and experienced counsel, you can capture the intended benefits of PTP ownership while minimizing the avoidable hazards that ensnare unwary investors.

Next Steps

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/Meet Chad D. Cummings

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I am an attorney and Certified Public Accountant serving clients throughout Florida and Texas.

Previously, I served in operations and finance with the world’s largest accounting firm (PricewaterhouseCoopers), airline (American Airlines), and bank (JPMorgan Chase & Co.). I have also created and advised a variety of start-up ventures.

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I also hold undergraduate (B.B.A.) and graduate (M.S.) degrees in accounting and taxation, respectively, from one of the premier universities in Texas. I earned my Juris Doctor (J.D.) and Master of Laws (LL.M.) degrees from Florida law schools. I also hold a variety of other accounting, tax, and finance credentials which I apply in my law practice for the benefit of my clients.

My practice emphasizes, but is not limited to, the law as it intersects businesses and their owners. Clients appreciate the confluence of my business acumen from my career before law, my technical accounting and financial knowledge, and the legal insights and expertise I wield as an attorney. I live and work in Naples, Florida and represent clients throughout the great states of Florida and Texas.

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